Introduction
Part 1 · Configuration & Usage
1. Overview: What is omicOS
2. Prerequisites & System Requirements
3. Installation: via npm
4. Configure the Python Analysis Environment
5. First Login & Cloud Account
6. Starting omicOS: serve mode (browser)
7. Starting omicOS: cli mode (terminal)
8. Remote / SSH / HPC Deployment Recipes
9. Command & Flag Reference
10. Environment Variable Reference
11. Directory Structure & On-Disk Files
12. Advanced (1): LLM Providers & Models
13. Advanced (2): Agents / Skills / Memory
14. Troubleshooting & Common Pitfalls
Part 2 · omicOS UI Walkthrough (app.omicos.cn)
Coming soon
Part 3 · Server-side Management Walkthrough (auth.omicos.cn)
Coming soon
Part 4 · Analysis Examples & Guides
Introduction
Single-cell Analysis
1. Data Preparation
2. Preprocessing
3. Cell Type Annotation
4. Visualization & Simple Differential Expression
5. Edit Figures in Canvas
Spatial Transcriptomics
Bulk Analysis
Published with HonKit
Introduction
Analysis Examples & Guides
This part will organize practical examples and guides by analysis type.
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