Introduction
Part 1 · Configuration & Usage
1. Overview: What is omicOS
2. Prerequisites & System Requirements
3. Installation: via npm
4. Configure the Python Analysis Environment
5. First Login & Cloud Account
6. Starting omicOS: serve mode (browser)
7. Starting omicOS: cli mode (terminal)
8. Remote / SSH / HPC Deployment Recipes
9. Command & Flag Reference
10. Environment Variable Reference
11. Directory Structure & On-Disk Files
12. Advanced (1): LLM Providers & Models
13. Advanced (2): Agents / Skills / Memory
14. Troubleshooting & Common Pitfalls
Part 2 · omicOS UI Walkthrough (app.omicos.cn)
Coming soon
Part 3 · Server-side Management Walkthrough (auth.omicos.cn)
Coming soon
Part 4 · Analysis Examples & Guides
Introduction
Single-cell Analysis
1. Data Preparation
2. Preprocessing
3. Cell Type Annotation
4. Visualization & Simple Differential Expression
5. Edit Figures in Canvas
Spatial Transcriptomics
Bulk Analysis
Published with HonKit
5. Edit Figures in Canvas
Edit Figures in Canvas
The complete tutorial is currently available in Chinese. English content will be added later.
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